Global change has converted many structurally complex and ecologically and eco- nomically valuable coastlines to bare substrate. In the structural habitats that remain, climate-tolerant and opportunistic species are increasing in response to environmental extremes and variability. The shifting of dominant foundation species identity with climate change poses a unique conservation challenge because species vary in their responses to environmental stressors and to management.

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With marine pollution issues becoming serious and widespread, a series of coastal environmental managemental policies are being carried out worldwide, the effectiveness of which requires comprehensive evaluation.

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Understanding shallow water biogeochemical dynamics is a challenge in coastal regions, due to the presence of highly variable land-water interface fluxes, tight coupling with sediment processes, tidal dynamics, and diurnal variability in biogeochemical processes.

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Many coastal ecosystems suffer from eutrophication, algal blooms, and dead zones due to excessive anthropogenic inputs of nitrogen (N) and phosphorus (P). This has led to regional restoration efforts that focus on managing watershed loads of N and P. In Chesapeake Bay, the largest estuary in the United States, dual nutrient reductions of N and P have been pursued since the 1980s.

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Synthesizing large, complex data sets to inform resource managers towards effective environmental stewardship is a universal challenge. In Chesapeake Bay, a well-studied and intensively monitored estuary in North America, the challenge of synthesizing data on water quality and land use as factors related to a key habitat, submerged aquatic vegetation, was tackled by a team of scientists and resource managers operating at multiple levels of governance (state, federal).

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This paper develops a barometer that indexes water quality in the Chesapeake Bay and summarizes quality over spatial regions and temporal periods. The barometer has a basis in risk assessment and hydrology, and is a function of three different metrics of water quality relative to numerical criteria: relative frequency of criterion attainment; magnitude of deviation from a numerical criterion; and duration of criterion attainment.

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Understanding drivers of water quality in local watersheds is the first step for implementing targeted restoration practices. Nutrient inventories can inform water quality management decisions by identifying shifts in nitrogen (N) and phosphorus (P) balances over space and time while also keeping track of the likely urban and agricultural point and nonpoint sources of pollution.

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Anthropogenic nutrient inputs have led to nutrient enrichment in many waterbodies worldwide, including Chesapeake Bay (USA). River water quality integrates the spatial and temporal changes of watersheds and forms the foundation for disentangling the effects of anthropogenic inputs.

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National Oceanic and Atmospheric Administration’s Coral Reef Conservation Program supports the National Coral Reef Monitoring Program (NCRMP) in the United States Pacific, Atlantic, Caribbean, and Gulf of Mexico.

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In Chesapeake Bay in the United States, decades of management efforts have resulted in modest reductions of nutrient loads from the watershed, but the corresponding improvements in estuarine water quality have not consistently followed. Generalize additive models were used to directly link river flows and nutrient loads from the watershed to nutrient trends in the estuary on a station-by-station basis, which allowed for identification of exactly when and where responses are happening.

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